LectureNotes < CS111GreenFA16

CS111GreenFA16 Web>LectureNotes (2016-12-06, Main.tanyabw) (raw view)EditAttach

---+ CS111 + Bio Schedule and Lecture Notes

(This is a preliminary schedule, to be changed wihtout notice)

| *<span style="color: palegreen;">Week</span>* | *<span style="color: palegreen;">Date</span>* | *<span style="color: palegreen;">Lecture/Lab Topic</span>* | *<span style="color: palegreen;">Reading</span>* | *<span style="color: palegreen;">Notes/Lab/Assignments</span>* |
| 1 | *8/22* | *No lab* | | |
| ^ | 8/23 | Intro to class, syllabus<br />Introduction to Computer Science<span style="color: darkgreen;"><br /></span> | [[Syllabus]]<br />Handout | [[%ATTACHURL%/Lec01Green_Introduction.pdf][Lec01Green_Introduction.pdf]] |
| ^ | 8/25 | <span style="color: darkgreen;">Introduction to Bio</span><br /><span style="color: darkgreen;"><span class="WYSIWYG_COLOR" style="color: darkslategray;">Variables</span> _(DNA)_ </span> | Sect. 0.1-0.5 | [[%ATTACHURL%/Lec02Green.pdf][Lec02Green.pdf]] |
| 2 | Lab | Setting up Python | | <p>Print your name, ID, major, year [[#_msocom_1][<br />]]</p> <p> *set vars: # A, C, T, G output: total string length, string duplication* </p> |
| ^ | 8/30 | <span style="color: darkgreen;">Introduction to Bio (contd)</span><br />strings | Sect. 0.6-0.8 | [[%ATTACHURL%/Lec03Green.pdf][Lec03Green.pdf]] |
| ^ | 9/1 | Sequences & indices & slicing<br /><span style="color: darkgreen;">Genbank</span> | | [[%ATTACHURL%/Lec4Green.pdf][Lec4Green.pdf]] |
| 3 | *9/5* | *No lab: Labor Day* | | |
| ^ | 9/6 | Slicing & lists <span style="color: darkgreen;"> _(Proteins)_ </span> | Sect. 0.9-0.15 | [[%ATTACHURL%/Lec5Green.pdf][Lec5Green.pdf]]<br />HW only; no lab (Labor Day) |
| ^ | 9/8 | File I/O, Genbank | | [[%ATTACHURL%/Lec6Green.pdf][Lec6Green.pdf<br />]] [[%ATTACHURL%/genbank.pdf][genbank.pdf]] |
| 4 | Lab | File manipulation | | <p>Open, read, write, close</p> <p> *Read and write to file. Dealing with sequencial reading* </p> |
| ^ | 9/13 | Functions | Sect. 1.1-1.5 | [[%ATTACHURL%/Lec7Green.pdf][Lec7Green.pdf]] |
| ^ | 9/15 | <span class="WYSIWYG_COLOR" style="color: darkgreen;"> _(%GC, transcription, strand orientation, ORF_ )</span> | | [[%ATTACHURL%/Lec8Green.pdf][Lec8Green.pdf]] |
| *5* | Lab | | | Functions, map-reduce |
| ^ | *9/20* | __REVIEW__ | | [[%ATTACHURL%/Lec9Green-Exam1Review.pdf][Lec9Green-Exam1Review.pdf]] |
| ^ | *9/22* | __EXAM I__ | | |
| 6 | Lab | | | <p>3-5 primer test</p> <p> *3-DNA to protein* </p> |
| ^ | 9/27 | Control flow & first loop: if, elif, else | Sect. 1.6-1.9<br />(Sect. 3.5) | [[%ATTACHURL%/Lec10Green.pdf][Lec10Green.pdf]] |
| ^ | 9/29 | Loops: for<br /><span style="color: darkgreen;">Pathogenicity</span> | Sect. 1.9-1.10 | [[%ATTACHURL%/Lec11Green.pdf][Lec11Green.pdf]] |
| 7 | Lab | For loops | | Reverse complement<br /><b style="background-color: transparent;">GC content</b> |
| ^ | 10/4 | Genes, GC, pathogenesity islands | Sect. 2.1-2.6 | [[%ATTACHURL%/Lec12Green_biology.pdf][Lec12Green_biology.pdf]] |
| ^ | 10/6 | <p>Loops:</p> <p>(Looping over lists, range, functions call functions)</p> | | [[%ATTACHURL%/Lec13Green.pdf][Lec13Green.pdf]] |
| 8 | Lab | More for loops | | |
| ^ | 10/11 | Still for loops | | [[%ATTACHURL%/Lec14Green.pdf][Lec14Green.pdf]] |
| ^ | 10/13 | For inside for inside for.... | Sect 3 | [[%ATTACHURL%/Lec15Green.pdf][Lec15Green.pdf]] |
| 9 | Lab | | | |
| ^ | 10/18 | _White House Frontiers slides_ | | [[https://goo.gl/photos/EHKBjuVdPJMuN3P49][Pictures from the conference]] (With captions) |
| ^ | 10/20 | Functions return lists | | <a href="http://igic.lab.uic.edu/courses/CSE111/Lec16Green.pdf" target="_self">Lec16Green.pdf</a> |
| 10 | Lab | Random numbers | | [[https://docs.python.org/2/library/random.html][Python documentation]] |
| ^ | 10/25 | While loops | | [[%ATTACHURL%/Lec17Green.pdf][Lec17Green.pdf]] |
| ^ | 10/27 | Genetics and heredity | | [[%ATTACHURL%/Lec18Green-bio.pdf][Lec18Green-bio.pdf]] |
| 11 | Lab  | While loops | | <br /> [[https://docs.python.org/2/library/random.html][<br />]]  |
| ^ | 11/1 | While loops and loop practice | | [[%ATTACHURL%/Lec19Green.pdf][Lec19Green.pdf]] |
| ^ | *11/3* | __REVIEW__ || |
| 12 | Lab | Unequal probabilities | | |
| ^ | *11/8*  | __EXAM II__ | | |
| ^ | 11/10 | Unequal probabilities | | [[%ATTACHURL%/Lec20Green.pdf][Lec20Green.pdf]] |
| 13 | Lab | Plotting in Python | | [[https://pythonprogramming.net/matplotlib-python-3-basics-tutorial/][matplotlib examples]] |
| ^ | 11/15 | Dictionaries | Sec 7.3 | [[%ATTACHURL%/Lec21Green.pdf][Lec21Green.pdf]] |
| ^ | 11/17 | Models of evolution | | [[%ATTACHURL%/Lec22Green.pdf][Lec22Green.pdf]] |
| 14 | Lab | | | |
| ^ | 11/22 | <span style="color: darkgreen;">Phylogenetic</span> trees | | |
| ^ | *11/24* | __NO CLASS Thanksgiving__ | | |
| 15 | Lab | | | |
| ^ | 11/29 | Review | | [[%ATTACHURL%/lecture24.pdf][lecture24.pdf]] |
| ^ | 12/1 | Review | | |
| *16* | *12/7<br />3:30-5:30* | *FINAL EXAM* | 120 TH | |
-- %USERSIG{tanyabw - 2016-08-21}%

Attachments

Topic attachments
I	Attachment	Action	Size	Date	Who
pdf	Lec01Green_Introduction.pdf	manage	3473.7 K	2016-08-26 - 16:36	UnknownUser
pdf	Lec02Green.pdf	manage	3329.4 K	2016-08-26 - 16:38	UnknownUser
pdf	Lec03Green.pdf	manage	8949.1 K	2016-08-31 - 01:26	UnknownUser
pdf	Lec4Green.pdf	manage	5012.5 K	2016-09-02 - 06:03	UnknownUser
pdf	Lec5Green.pdf	manage	479.6 K	2016-09-06 - 21:21	UnknownUser
pdf	Lec6Green.pdf	manage	297.3 K	2016-09-12 - 05:13	UnknownUser
pdf	Lec7Green.pdf	manage	434.1 K	2016-09-13 - 22:33	UnknownUser
pdf	genbank.pdf	manage	4837.9 K	2016-09-13 - 17:52	UnknownUser
pdf	Lec8Green.pdf	manage	3943.0 K	2016-09-20 - 16:58	UnknownUser
pdf	Lec9Green-Exam1Review.pdf	manage	675.6 K	2016-09-20 - 21:33	UnknownUser
pdf	Lec10Green.pdf	manage	1776.8 K	2016-09-28 - 06:56	UnknownUser
pdf	Lec11Green.pdf	manage	4465.6 K	2016-09-29 - 20:38	UnknownUser
pdf	Lec12Green_biology.pdf	manage	4898.4 K	2016-10-06 - 18:18	UnknownUser
pdf	Lec13Green.pdf	manage	831.4 K	2016-10-06 - 20:54	UnknownUser
pdf	Lec14Green.pdf	manage	1113.0 K	2016-10-11 - 21:24	UnknownUser
pdf	Lec15Green.pdf	manage	2118.7 K	2016-10-18 - 18:35	UnknownUser
pdf	Lec16green.pdf	manage	1148.6 K	2016-10-22 - 18:06	UnknownUser
pdf	Lec17Green.pdf	manage	550.1 K	2016-10-31 - 16:53	UnknownUser
pdf	Lec18Green-bio.pdf	manage	3042.2 K	2016-10-31 - 16:36	UnknownUser
pdf	Lec19Green.pdf	manage	415.1 K	2016-11-03 - 06:23	UnknownUser
pdf	Lec20Green.pdf	manage	310.5 K	2016-11-16 - 00:56	UnknownUser
pdf	Lec21Green.pdf	manage	243.4 K	2016-11-16 - 00:56	UnknownUser
pdf	Lec22Green.pdf	manage	6955.2 K	2016-12-06 - 19:58	UnknownUser
pdf	lecture24.pdf	manage	231.5 K	2016-12-06 - 20:14	UnknownUser

Topic revision: r26 - 2016-12-06 - 20:15:12 - Main.tanyabw

CS111GreenFA16

WISEST
Helping Women Faculty Advance
Funded by NSF